Samtools

13 CVEs across 3 Samtools products. Browse Samtools vulnerabilities, severities, and proof-of-concept exploits.

Samtools products with known CVEs

ProductCVEs
Htslib10
Samtools2
Htsjdk1
Samtools CVEs — newest first
CVESeverityScorePublishedSummary
CVE-2026-31973High7.52026-03-18SAMtools is a program for reading, manipulating and writing bioinformatics file formats. Starting in version 1.17, in the cram-size command, used to write info…
CVE-2026-31972Critical9.82026-03-18SAMtools is a program for reading, manipulating and writing bioinformatics file formats. The `mpileup` command outputs DNA sequences that have been aligned aga…
CVE-2026-31971High8.12026-03-18HTSlib is a library for reading and writing bioinformatics file formats. CRAM is a compressed format which stores DNA sequence alignment data using a variety o…
CVE-2026-31970High8.12026-03-18HTSlib is a library for reading and writing bioinformatics file formats. GZI files are used to index block-compressed GZIP [BGZF] files. In the GZI loading fu…
CVE-2026-31969High8.12026-03-18HTSlib is a library for reading and writing bioinformatics file formats. CRAM is a compressed format which stores DNA sequence alignment data using a variety o…
CVE-2026-31968High8.12026-03-18HTSlib is a library for reading and writing bioinformatics file formats. CRAM is a compressed format which stores DNA sequence alignment data using a variety o…
CVE-2026-31967Critical9.12026-03-18HTSlib is a library for reading and writing bioinformatics file formats. CRAM is a compressed format which stores DNA sequence alignment data. In the `cram_dec…
CVE-2026-31966Critical9.12026-03-18HTSlib is a library for reading and writing bioinformatics file formats. CRAM is a compressed format which stores DNA sequence alignment data. As one method of…
CVE-2026-31965High8.22026-03-18HTSlib is a library for reading and writing bioinformatics file formats. CRAM is a compressed format which stores DNA sequence alignment data. In the `cram_dec…
CVE-2026-31964High7.52026-03-18HTSlib is a library for reading and writing bioinformatics file formats. CRAM is a compressed format which stores DNA sequence alignment data using a variety o…
CVE-2026-31963High8.12026-03-18HTSlib is a library for reading and writing bioinformatics file formats. CRAM is a compressed format which stores DNA sequence alignment data. As one method of…
CVE-2026-31962High8.82026-03-18HTSlib is a library for reading and writing bioinformatics file formats. CRAM is a compressed format which stores DNA sequence alignment data. While most align…
CVE-2022-21126High7.32022-11-29The package com.github.samtools:htsjdk before 3.0.1 are vulnerable to Creation of Temporary File in Directory with Insecure Permissions due to the createTempDi…